I am a postdoc at Cancer Institute at UCL in the group of James Reading. I did my PhD with Wolfgang Huber at EMBL Heidelberg. Before joining UCL, I did a bridging postdoc with Simon Anders at Heidelberg University.
Currently, I am working on novel ways to analyze the role of T cells in early cancerogenesis.
Previously, I have worked on:
For a full record of my publications, see Google scholar.
In addition, I develop statistical methods and tools for the analysis of cutting edge biological data. I maintain ten R packages which are published on CRAN and Bioconductor and total more than 100,000 downloads per month. In 2023, I received the Bioconductor community award in recognition of my contributions to the project.
If you are working in a company and would like help with some analysis or one of my packages, please get in touch, as I am happy to consult on projects.
Bezier curves for ggplot2.
R package for “Latent Embedding Multivariate Regression”
Python package for “Latent Embedding Multivariate Regression”
Variance stabilizing transformation for Gamma Poisson distributed data
Einstein Summation for Arrays in R
Fit Gamma-Poisson Generalized Linear Models Reliably
Implementation of the matrixStats
API for sparse matrices
R package for “Protein Differential Abundance Analysis for Label-Free Mass Spectrometry Data”
Plot a combination matrix instead of the standard x-axis and create UpSet plots with ggplot2.
R package for clustering high dimensional categorical data
Tidy Verbs for Dealing with Genomic Data Frames
A ggplot2
extension to add significance brackets