Recent Posts

Visualization of test classification and underlying ground truth

Important properties and mathematical definitions

The different ways to encode categorical variables in linear models

Making DESeq2 ready for Single Cell Data

Two month ago, I started my PhD and the first assignment I got was to optimize the performance of an R package called DESeq2. In …

Projects

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transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

einsum

Einstein Summation for Arrays in R

glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

proDA

R package for “Protein Differential Abundance Analysis for Label-Free Mass Spectrometry Data”

ggupset

Plot a combination matrix instead of the standard x-axis and create UpSet plots with ggplot2.

mixdir

R package for clustering high dimensional categorical data

tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames

ggsignif

A ggplot2 extension to add significance brackets

iGEM 2014

Student Competition for Synthetic Biology