Recent Posts

Find the standard deviation of $g(X)$
3 min read

Visualization of test classification and underlying ground truth
1 min read

Important properties and mathematical definitions
Last updated on 4 min read

The different ways to encode categorical variables in linear models
7 min read

Making DESeq2 ready for Single Cell Data
Last updated on 3 min read
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Projects

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All ggplot2 extension R packages Single-cell

transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

einsum

Einstein Summation for Arrays in R

glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

proDA

R package for “Protein Differential Abundance Analysis for Label-Free Mass Spectrometry Data”

ggupset

Plot a combination matrix instead of the standard x-axis and create UpSet plots with ggplot2.

mixdir

R package for clustering high dimensional categorical data

tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames

ggsignif

A ggplot2 extension to add significance brackets

iGEM 2014

Student Competition for Synthetic Biology

Recent Publications

Theoretical and empirical analysis of transformation methods for single-cell data.
PDF Project DOI Reproducibility R package Github

Fit Gamma-Poisson Generalized Linear Models Reliably.
PDF Project DOI Reproducibility R package Github

Decide which proteins are differentially abundant in label-free mass spectormetry without imputation.
PDF Project DOI Reproducibility R package Github

Cluster high-dimensional categorical observations using an approximate Bayesian inference algorithm
PDF Project DOI Reproducibility R package Github

Circularization of Xylanase can improve its thermostability
PDF Project DOI